Commits · 1a61363d016b0dfcb698e9682ee3b0a408fc6bee · BICF / Astrocyte / chipseq_analysis

Dec 27, 2018
- Add test for motif search output. · 1a61363d
  Venkat Malladi authored 6 years ago
  
  1a61363d
- Check differential peaks. · d84a3b62
  Venkat Malladi authored 6 years ago
  
  d84a3b62
- Remove testing design string. · eea9ab16
  Venkat Malladi authored 6 years ago
  
  eea9ab16
- Fix tests so they run on single end and paired end. · c508559b
  Venkat Malladi authored 6 years ago
  
  c508559b
- Fix motif search and limit number of peaks. · 813fb41d
  Venkat Malladi authored 6 years ago
  
  813fb41d
Dec 26, 2018
- Remove output and rename touched files. · 6de1721c
  Venkat Malladi authored 6 years ago
  
  6de1721c
- Update script name, R version and end result. · 6f6aa9d5
  Venkat Malladi authored 6 years ago
  
  6f6aa9d5
- Fix program description. · 954ecd5f
  Venkat Malladi authored 6 years ago
  
  954ecd5f
- Change R version and output. · e7b72cfb
  Venkat Malladi authored 6 years ago
  
  e7b72cfb
Dec 24, 2018
- Remove extra parathesis · c6374f18
  Venkat Malladi authored 6 years ago
  
  c6374f18
- Test annotate peaks. · ea9dc8e6
  Venkat Malladi authored 6 years ago
  
  ea9dc8e6
- Add in paired end test data. · 7bddefc4
  Venkat Malladi authored 6 years ago
  
  7bddefc4
- Added in test data for comparisions. · cf982549
  Venkat Malladi authored 6 years ago
  
  cf982549
Dec 17, 2018
- Defaulted to zcat instead of unzip file. · ec737360
  Venkat Malladi authored 6 years ago
  
  ec737360
Dec 16, 2018
- Update motif search scripts to meet new python standards · e2f0afca
  Venkat Malladi authored 6 years ago
  
  e2f0afca
- Merge branch 'master' into 15_Annotation_diff_bind · fa33cd9b
  Venkat Malladi authored 6 years ago
  
  fa33cd9b
Nov 02, 2018
- Rever changes. · 7b165eab
  Venkat Malladi authored 6 years ago
  
  7b165eab
Nov 01, 2018
- Add missing deeptools script. · 2cdebf21
  Venkat Malladi authored 6 years ago
  
  publish_0.0.16
  
  2cdebf21
- Fix Beibei's version of pipeline. · c011b6a1
  Venkat Malladi authored 6 years ago
  
  publish_0.0.15
  
  c011b6a1
Oct 31, 2018
- Revert changes. · df14067f
  Venkat Malladi authored 6 years ago
  
  df14067f
- Add in old main.nf to fix organism in chipseeker. · bb5a6702
  Venkat Malladi authored 6 years ago
  
  publish_0.0.14
  
  bb5a6702
- Revert main · acebeb68
  Venkat Malladi authored 6 years ago
  
  acebeb68
- Fix current chip-seq pipeline. · 2d887a76
  Venkat Malladi authored 6 years ago
  
  2d887a76
Aug 14, 2018
- Add proper syntax. · f44b0481
  Venkat Malladi authored 6 years ago
  
  f44b0481
- Fix syntax and readlines. · 6a2d842c
  Venkat Malladi authored 6 years ago
  
  6a2d842c
- New test. · a0568644
  Venkat Malladi authored 6 years ago
  
  a0568644
- Fix reading experiment files. · 3df606ed
  Venkat Malladi authored 6 years ago
  
  3df606ed
- Change to just size. · c0d36466
  Venkat Malladi authored 6 years ago
  
  c0d36466
- Change to new conventions. · 035156b7
  Venkat Malladi authored 6 years ago
  
  035156b7
- Upgrade nextflow version. · 998c2bd7
  Venkat Malladi authored 6 years ago
  
  998c2bd7
- Fix channel. · eea2f6f3
  Venkat Malladi authored 6 years ago
  
  eea2f6f3
- Add in paired end tests for calling peaks. · e3a0a043
  Venkat Malladi authored 6 years ago
  
  e3a0a043
Aug 13, 2018
- Fix diffBind output. · ffbb85b0
  Venkat Malladi authored 6 years ago
  
  ffbb85b0
- Add in Resume option. · fe188a10
  Venkat Malladi authored 6 years ago
  
  fe188a10
Aug 11, 2018
- Hardcode to 2. · 2b4d340c
  Venkat Malladi authored 6 years ago
  
  2b4d340c
- Fix syntax. · c9b2fa2e
  Venkat Malladi authored 6 years ago
  
  c9b2fa2e
- Fix diffbind. · 1bc7294b
  Venkat Malladi authored 6 years ago
  
  1bc7294b
- First pass at updating documentation. · 7795c421
  Venkat Malladi authored 6 years ago
  
  7795c421
- Fix library issues for R. · 0e768b53
  Venkat Malladi authored 6 years ago
  
  0e768b53
- Update samtools. · 805590f5
  Venkat Malladi authored 6 years ago
  
  805590f5