.gitlab-ci.yml

astrocyte_pkg.yml

docs/references.md

env.md

workflow/conf/biohpc.config

workflow/conf/multiqc_config.yaml

workflow/main.nf

workflow/nextflow.config

workflow/scripts/annotate_peaks.R

workflow/scripts/call_peaks_macs.py

workflow/scripts/convert_reads.py

workflow/scripts/diff_peaks.R

workflow/scripts/experiment_qc.py

workflow/scripts/generate_references.py

workflow/scripts/generate_versions.py

workflow/scripts/map_qc.py

workflow/scripts/map_reads.py

workflow/scripts/motif_search.py

workflow/scripts/overlap_peaks.py

workflow/scripts/pool_and_psuedoreplicate.py