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Commit de9c71ea authored by Venkat Malladi's avatar Venkat Malladi
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Revert back to bytes.

parent 5f6d04dd
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1 merge request!23Resolve "Output software versions and methods and references"
Pipeline #3245 failed with stages
in 2 minutes and 29 seconds
......@@ -99,7 +99,7 @@ def check_tools():
bg_bw_version = e.output
# Write to file
bg_bw_file = open("version_bedGraphToBigWig.txt", "w")
bg_bw_file = open("version_bedGraphToBigWig.txt", "wb")
bg_bw_file.write(bg_bw_version)
bg_bw_file.close()
else:
......
......@@ -60,7 +60,7 @@ def check_tools():
bedtools_version = subprocess.check_output(bedtools_version_command, shell=True)
# Write to file
bedtools_file = open("version_bedtools.txt", "w")
bedtools_file = open("version_bedtools.txt", "wb")
bedtools_file.write(bedtools_version)
bedtools_file.close()
else:
......@@ -76,7 +76,7 @@ def check_tools():
samtools_version = subprocess.check_output(samtools_version_command, shell=True)
# Write to file
samtools_file = open("version_samtools.txt", "w")
samtools_file = open("version_samtools.txt", "wb")
samtools_file.write(samtools_version)
samtools_file.close()
else:
......
......@@ -58,7 +58,7 @@ def check_tools():
deeptools_version = subprocess.check_output(deeptools_version_command, shell=True, stderr=subprocess.STDOUT)
# Write to file
deeptools_file = open("version_deeptools.txt", "w")
deeptools_file = open("version_deeptools.txt", "wb")
deeptools_file.write(deeptools_version)
deeptools_file.close()
else:
......
......@@ -103,7 +103,7 @@ def check_tools():
bedtools_version = subprocess.check_output(bedtools_version_command, shell=True)
# Write to file
bedtools_file = open("version_bedtools.txt", "w")
bedtools_file = open("version_bedtools.txt", "wb")
bedtools_file.write(bedtools_version)
bedtools_file.close()
else:
......
......@@ -95,7 +95,7 @@ def check_tools():
samtools_version = subprocess.check_output(samtools_version_command, shell=True)
# Write to file
samtools_file = open("version_samtools.txt", "w")
samtools_file = open("version_samtools.txt", "wb")
samtools_file.write(samtools_version)
samtools_file.close()
else:
......
......@@ -87,7 +87,7 @@ def check_tools():
bedtools_version = subprocess.check_output(bedtools_version_command, shell=True)
# Write to file
bedtools_file = open("version_bedtools.txt", "w")
bedtools_file = open("version_bedtools.txt", "wb")
bedtools_file.write(bedtools_version)
bedtools_file.close()
else:
......
......@@ -56,7 +56,7 @@ def check_tools():
bedtools_version = subprocess.check_output(bedtools_version_command, shell=True)
# Write to file
bedtools_file = open("version_bedtools.txt", "w")
bedtools_file = open("version_bedtools.txt", "wb")
bedtools_file.write(bedtools_version)
bedtools_file.close()
else:
......
......@@ -60,7 +60,7 @@ def check_tools():
trimgalore_version = subprocess.check_output(trim_version_command, shell=True)
# Write to file
trimgalore_file = open("version_trimgalore.txt", "w")
trimgalore_file = open("version_trimgalore.txt", "wb")
trimgalore_file.write(trimgalore_version)
trimgalore_file.close()
else:
......@@ -76,7 +76,7 @@ def check_tools():
cutadapt_version = subprocess.check_output(cutadapt_version_command, shell=True)
# Write to file
cutadapt_file = open("version_cutadapt.txt", "w")
cutadapt_file = open("version_cutadapt.txt", "wb")
cutadapt_file.write("Version %s" % (cutadapt_version))
cutadapt_file.close()
else:
......
......@@ -66,7 +66,7 @@ def check_tools():
r_version = subprocess.check_output(r_version_command, shell=True)
# Write to file
r_file = open("version_r.txt", "w")
r_file = open("version_r.txt", "wb")
r_file.write(r_version)
r_file.close()
else:
......@@ -82,7 +82,7 @@ def check_tools():
spp_version = subprocess.check_output(spp_version_command, shell=True)
# Write to file
spp_file = open("version_spp.txt", "w")
spp_file = open("version_spp.txt", "wb")
spp_file.write(spp_version)
spp_file.close()
else:
......
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