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BICF
Astrocyte
chipseq_analysis
Commits
d536f140
Commit
d536f140
authored
Feb 29, 2020
by
Venkat Malladi
Browse files
Fix tabs and spaces.
parent
1448727e
Pipeline
#6189
failed with stages
in 5 seconds
Changes
1
Pipelines
1
Hide whitespace changes
Inline
Side-by-side
workflow/tests/test_pool_and_psuedoreplicate.py
View file @
d536f140
...
...
@@ -37,7 +37,7 @@ def design_experiment_3(design_experiment):
design_df
=
design_experiment
.
drop
(
design_experiment
.
index
[
1
])
# Update to be paired as first
design_experiment
.
loc
[
0
,
'control_tag_align'
]
=
'B_1.bedpe.gz'
design_experiment
.
loc
[
0
,
'tag_align'
]
=
'A_1.bedpe.gz'
design_experiment
.
loc
[
0
,
'tag_align'
]
=
'A_1.bedpe.gz'
return
design_experiment
...
...
@@ -74,8 +74,8 @@ def test_single_rep(design_experiment_2):
shutil
.
copy
(
test_design_path
+
'B_1.tagAlign.gz'
,
cwd
)
single_rep
=
pool_and_psuedoreplicate
.
generate_design
(
'false'
,
1.2
,
design_experiment_2
,
cwd
,
1
,
1
)
assert
single_rep
.
shape
[
0
]
==
4
assert
len
(
single_rep
[
'control_tag_align'
].
unique
())
==
1
assert
single_rep
[
'control_tag_align'
].
unique
()[
0
]
==
'B_1.tagAlign.gz'
assert
len
(
single_rep
[
'control_tag_align'
].
unique
())
==
1
assert
single_rep
[
'control_tag_align'
].
unique
()[
0
]
==
'B_1.tagAlign.gz'
@
pytest
.
mark
.
unit
...
...
@@ -85,7 +85,7 @@ def test_single_control(design_experiment_3):
shutil
.
copy
(
test_design_path
+
'B_1.bedpe.gz'
,
cwd
)
shutil
.
copy
(
test_design_path
+
'A_1.tagAlign.gz'
,
cwd
)
single_control
=
pool_and_psuedoreplicate
.
generate_design
(
'true'
,
1.2
,
design_experiment_3
,
cwd
,
1
,
1
)
assert
single_control
[
'control_tag_align'
].
unique
()
==
'B_1.tagAlign.gz'
assert
single_control
[
'control_tag_align'
].
unique
()
==
'B_1.tagAlign.gz'
@
pytest
.
mark
.
singleend
...
...
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