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Commit d0a6516b authored by Venkat Malladi's avatar Venkat Malladi
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Add in software versions.

parent 963a6f77
1 merge request!23Resolve "Output software versions and methods and references"
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workflow/scripts/software_report.py
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...@@ -18,7 +18,7 @@ regexes = { ...@@ -18,7 +18,7 @@ regexes = {
'bedGraphToBigWig': ['version_bedGraphToBigWig.txt', r"bedGraphToBigWig v (\S+)"], 'bedGraphToBigWig': ['version_bedGraphToBigWig.txt', r"bedGraphToBigWig v (\S+)"],
'ChIPseeker': ['version_ChIPseeker.txt', r"Version (\S+)\""], 'ChIPseeker': ['version_ChIPseeker.txt', r"Version (\S+)\""],
'MEME-ChIP': ['version_memechip.txt', r"Version (\S+)"], 'MEME-ChIP': ['version_memechip.txt', r"Version (\S+)"],
'DiffBind': ['version_DiffBind.txt', r"Version (\S+)"], 'DiffBind': ['version_DiffBind.txt', r"Version (\S+)\""],
'deepTools': ['version_deeptools.txt', r"deeptools (\S+)"], 'deepTools': ['version_deeptools.txt', r"deeptools (\S+)"],
} }
...@@ -52,8 +52,8 @@ for k, v in regexes.items(): ...@@ -52,8 +52,8 @@ for k, v in regexes.items():
# Dump to YAML # Dump to YAML
print( print(
''' '''
id: 'BICF ChIP-seq Analaysis' id: 'BICF ChIP-seq Analysis'
section_name: 'BICF ChIP-seq Analaysis Software Versions' section_name: 'Software Versions'
section_href: 'https://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/' section_href: 'https://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/'
plot_type: 'html' plot_type: 'html'
description: 'are collected at run time from the software output.' description: 'are collected at run time from the software output.'
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