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Commit c6125480 authored by Venkat Malladi's avatar Venkat Malladi
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Add astrocyte false for running.

parent e2e9be38
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1 merge request!25Resolve "Test Astrocyte"
Pipeline #3571 failed with stages
in 13 hours, 37 minutes, and 51 seconds
...@@ -32,7 +32,7 @@ single_end_mouse: ...@@ -32,7 +32,7 @@ single_end_mouse:
only: only:
- master - master
script: script:
- nextflow run workflow/main.nf -resume - nextflow run workflow/main.nf --astrocyte 'false' -resume
- pytest -m singleend - pytest -m singleend
artifacts: artifacts:
expire_in: 2 days expire_in: 2 days
...@@ -44,7 +44,7 @@ paired_end_human: ...@@ -44,7 +44,7 @@ paired_end_human:
except: except:
- master - master
script: script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true -resume - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true --astrocyte 'false' -resume
- pytest -m pairedend - pytest -m pairedend
artifacts: artifacts:
expire_in: 2 days expire_in: 2 days
...@@ -56,7 +56,7 @@ single_end_diff: ...@@ -56,7 +56,7 @@ single_end_diff:
except: except:
- master - master
script: script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' -resume - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --astrocyte 'false' -resume
- pytest -m singlediff - pytest -m singlediff
artifacts: artifacts:
expire_in: 2 days expire_in: 2 days
...@@ -66,7 +66,7 @@ paired_end_diff: ...@@ -66,7 +66,7 @@ paired_end_diff:
- master - master
stage: multiple stage: multiple
script: script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_PE.txt" --genome 'GRCh38' --pairedEnd true -resume - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_PE.txt" --genome 'GRCh38' --pairedEnd true --astrocyte 'false' -resume
- pytest -m paireddiff - pytest -m paireddiff
artifacts: artifacts:
expire_in: 2 days expire_in: 2 days
...@@ -76,7 +76,7 @@ single_end_skip: ...@@ -76,7 +76,7 @@ single_end_skip:
only: only:
- master - master
script: script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --skipDiff true --skipMotif true -resume - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --skipDiff true --skipMotif true --astrocyte 'false' -resume
- pytest -m singleskip_true - pytest -m singleskip_true
artifacts: artifacts:
expire_in: 2 days expire_in: 2 days
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