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Commit a7b7e90c authored by Venkat Malladi's avatar Venkat Malladi
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Merge branch '34-yaml_reader_fix' into 'master'

Update tests and import of yaml.

Closes #34

See merge request !24
parents 9eb09c23 302a2915
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1 merge request!24Update tests and import of yaml.
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......@@ -24,7 +24,7 @@ def test_upsetplot_singleend():
def test_annotation_singleend():
annotation_file = test_output_path + 'ENCSR238SGC.chipseeker_annotation.tsv'
assert os.path.exists(annotation_file)
assert utils.count_lines(annotation_file) == 152255
assert utils.count_lines(annotation_file) == 149284
@pytest.mark.pairedend
......
......@@ -3,6 +3,7 @@
import pytest
import os
import utils
import yaml
test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
'/../output/softwareReport/'
......
......@@ -3,6 +3,7 @@
import pytest
import os
import utils
import yaml
test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
'/../output/softwareReport/'
......
......@@ -37,7 +37,7 @@ def test_check_update_design(design_diff):
def test_overlap_peaks_singleend():
assert os.path.exists(os.path.join(test_output_path, 'ENCSR238SGC.rejected.narrowPeak'))
peak_file = test_output_path + 'ENCSR238SGC.replicated.narrowPeak'
assert utils.count_lines(peak_file) == 152262
assert utils.count_lines(peak_file) == 149291
@pytest.mark.pairedend
......
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