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Merge branch '3-mapping-trimming' into 'master'
Resolve "Add mapping and trimming" Closes #3 See merge request !5
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- .gitlab-ci.yml 3 additions, 0 deletions.gitlab-ci.yml
- astrocyte_pkg.yml 30 additions, 10 deletionsastrocyte_pkg.yml
- nextflow.config 0 additions, 5 deletionsnextflow.config
- workflow/conf/biohpc.config 33 additions, 0 deletionsworkflow/conf/biohpc.config
- workflow/main.nf 61 additions, 9 deletionsworkflow/main.nf
- workflow/nextflow.config 5 additions, 0 deletionsworkflow/nextflow.config
- workflow/scripts/check_design.py 9 additions, 7 deletionsworkflow/scripts/check_design.py
- workflow/scripts/map_reads.py 201 additions, 0 deletionsworkflow/scripts/map_reads.py
- workflow/scripts/qc_fastq.py 1 addition, 1 deletionworkflow/scripts/qc_fastq.py
- workflow/scripts/trim_reads.py 96 additions, 0 deletionsworkflow/scripts/trim_reads.py
- workflow/scripts/utils.py 55 additions, 0 deletionsworkflow/scripts/utils.py
- workflow/tests/test_check_design.py 5 additions, 6 deletionsworkflow/tests/test_check_design.py
- workflow/tests/test_map_reads.py 17 additions, 0 deletionsworkflow/tests/test_map_reads.py
- workflow/tests/test_trim_reads.py 21 additions, 0 deletionsworkflow/tests/test_trim_reads.py
- workflow/tests/test_utils.py 69 additions, 0 deletionsworkflow/tests/test_utils.py
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