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BICF
Astrocyte
chipseq_analysis
Commits
3b0aeaf6
Commit
3b0aeaf6
authored
Mar 15, 2020
by
Venkat Malladi
Browse files
Clear java core dumps.
parent
1a300201
Changes
1
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.gitlab-ci.yml
View file @
3b0aeaf6
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@@ -2,6 +2,7 @@ before_script:
-
module add python/3.6.1-2-anaconda
-
pip install --user pytest-pythonpath==0.7.1 pytest-cov==2.5.1
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module load nextflow/0.31.0
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ulimit -Ss unlimited
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ln -s /project/shared/bicf_workflow_ref/workflow_testdata/chipseq/*fastq.gz test_data/
stages
:
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@@ -51,7 +52,7 @@ single_end_single_control:
script
:
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nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_single_contol_SE.txt" --genome 'GRCh38' --pairedEnd
false
--astrocyte
false
-
pytest -m singlecontrol
single_end_diff
:
stage
:
multiple
only
:
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