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Commit 39092668 authored by Jeremy Mathews's avatar Jeremy Mathews
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revert to last version

parent a202eec2
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1 merge request!54Resolve "Single control or experiment fails at call peaks macs"
Pipeline #4427 canceled with stages
in 38 seconds
......@@ -312,25 +312,25 @@ def generate_design(paired, cutoff_ratio, design_df, cwd, no_reps, no_unique_con
path_to_pool_control = cwd + '/' + pool_control
design_new_df['control_tag_align'] = path_to_pool_control
# Add in pseudo replicates
tmp_metadata = design_new_df.loc[0].copy()
tmp_metadata['control_tag_align'] = path_to_pool_control
for rep, pseudorep_file in pool_pseudoreplicates_dict.items():
tmp_metadata['sample_id'] = experiment_id + '_pr' + str(rep)
tmp_metadata['replicate'] = str(rep) + '_pr'
# Add in pseudo replicates
tmp_metadata = design_new_df.loc[0].copy()
tmp_metadata['control_tag_align'] = path_to_pool_control
for rep, pseudorep_file in pool_pseudoreplicates_dict.items():
tmp_metadata['sample_id'] = experiment_id + '_pr' + str(rep)
tmp_metadata['replicate'] = str(rep) + '_pr'
tmp_metadata['xcor'] = 'Calculate'
path_to_file = cwd + '/' + pseudorep_file
tmp_metadata['tag_align'] = path_to_file
design_new_df = design_new_df.append(tmp_metadata)
# Add in pool experiment
tmp_metadata['sample_id'] = experiment_id + '_pooled'
tmp_metadata['replicate'] = 'pooled'
tmp_metadata['xcor'] = 'Calculate'
path_to_file = cwd + '/' + pseudorep_file
path_to_file = cwd + '/' + pool_experiment_se
tmp_metadata['tag_align'] = path_to_file
design_new_df = design_new_df.append(tmp_metadata)
# Add in pool experiment
tmp_metadata['sample_id'] = experiment_id + '_pooled'
tmp_metadata['replicate'] = 'pooled'
tmp_metadata['xcor'] = 'Calculate'
path_to_file = cwd + '/' + pool_experiment_se
tmp_metadata['tag_align'] = path_to_file
design_new_df = design_new_df.append(tmp_metadata)
return design_new_df
......
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