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Commit 2eddbd49 authored by Venkat Malladi's avatar Venkat Malladi
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Fix output dedupdesign.

parent 5b792c55
1 merge request!8Resolve "Update deeptools"
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...@@ -164,8 +164,10 @@ process filterReads { ...@@ -164,8 +164,10 @@ process filterReads {
} }
// Define channel collecting new design file // Define channel collecting new design file
dedupDesign = dedupReads. dedupDesign = dedupReads
collectFile(name:'design_dedup.tsv', seed:"sample_id\tbam_reads\tbam_index\tbiosample\tfactor\ttreatment\treplicate\tcontrolId\n", storeDir:"$baseDir/output/design") .map{ sampleId, bam, bai, biosample, factor, treatment, replicate, controlId ->
"$sample_id\t$bam\t$bai\t$biosample\t$factor\t$treatment\t$replicate\t$controlId\n"}
.collectFile(name:'design_dedup.tsv', seed:"sample_id\tbam_reads\tbam_index\tbiosample\tfactor\ttreatment\treplicate\tcontrolId\n", storeDir:"$baseDir/output/design")
// Quality Metrics using deeptools // Quality Metrics using deeptools
process experimentQC { process experimentQC {
......
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