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Commit 22db60b0 authored by Venkat Malladi's avatar Venkat Malladi
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Update outdir default.

parent b20526ff
1 merge request!16Add option for outdir.
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...@@ -13,7 +13,7 @@ params.bwaIndex = params.genome ? params.genomes[ params.genome ].bwa ?: false : ...@@ -13,7 +13,7 @@ params.bwaIndex = params.genome ? params.genomes[ params.genome ].bwa ?: false :
params.genomeSize = params.genome ? params.genomes[ params.genome ].genomesize ?: false : false params.genomeSize = params.genome ? params.genomes[ params.genome ].genomesize ?: false : false
params.chromSizes = params.genome ? params.genomes[ params.genome ].chromsizes ?: false : false params.chromSizes = params.genome ? params.genomes[ params.genome ].chromsizes ?: false : false
params.cutoffRatio = 1.2 params.cutoffRatio = 1.2
params.outDir= "$outDir" params.outDir= "$baseDir/output"
params.extendReadsLen = 100 params.extendReadsLen = 100
// Check inputs // Check inputs
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