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Created with Raphaël 2.2.020Jun6Jan131Dec28272623208Nov78Oct110Sep329Aug2714531Jul2423221910828Jun262524May21201727Apr262523221211109875428Mar242118Jun151487Merge branch 'develop' into 'master'mkfastq run on high power node, version 2.1.1Merge branch 'develop' into 'master'Set version to 2.1.0Merge branch 'de-containerize' into 'develop'Remove export location settings which causes an error in biohpcUpdate changelogAdd de-containerized note to readme: cloud compatibilityRemove containers and add modulesFix pipeline badgescontainerizedcontainerizedMerge branch 'update' into 'develop'Update readmeUpdate changelogUpdate containers to 2.0.0 and rejigger configsUse Nextflow 20.01.0 for CIFix cluser profileRemove any folder from nextflow.configCorrect CI nextflow profile callAdd back nextflow.config symlinkAdd biohpc option for config and remove symlinked nextflow.congigReturn configs to any dir source and add symlink for nextflow.config into repo rootHardwire configs for running in repo rootLook for the configs folder anyhereLayer configsRun trackStart local with no containerFix more commentsAdd astrocyte paramFix more commentsFix more commentsFix pipelineVersion var passingFix comment for pigzScriptAdd pipeline trackingRemove pigz versionRemove quote from configAdd back pipeline and nextflow version to version collectionUpdate changelogAdd nextflow version and manual pipeline version to multiqc outputAdd mask as a param (non-Astrocyte)Remove base maskMove ignore dual index before mask and remove i2 from mask