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Created with Raphaël 2.2.03Nov30Oct2014Sep722Jul17149821Jun206Jan131Dec28272623208Nov78Oct110Sep329Aug2714531Jul2423221910828Jun262524May21201727Apr262523221211109875428Mar242118Jun151487Change main and scriptsPrep 3.0.0_indevMerge branch 'develop' into 'master'publish_2.2.0 m…publish_2.2.0 masterRemove indevMerge branch 'cellranger-4.0.0_ref-2020A' into 'develop'RevertAdd back ignor-dual-indexMerge branch 'revert-d5871e2a' into 'cellranger-4.0.0_ref-2020A'Revert "Merge branch 'containerize' into 'cellranger-4.0.0_ref-2020A'"Update singularity version.test_2.2.0rc5test_2.2.0rc5add cache directory to current workdir.test_2.2.0rc4test_2.2.0rc4Update default config to be astrocyte and include astrocyte config.test_2.2.0rc3test_2.2.0rc3Revert astrocyte pkg.Change to job id.Change to job namme.Test changing nextflow version to one that doesn't exist.remove track start.test_2.2.0rc2test_2.2.0rc2Add in change log.test_2.2.0test_2.2.0Add astrocyte true param.Use loser case -c since there is not default config found.Comment out tracking.Update path name.Update order of config.Uncommment the trackstart.Update readme to include config.Update location of config.Test astrocyte 0.4.0. Closes #42.Update to test astrocyte 0.4.0. Closes #42.Update to have astrocyte version and testing. Closes #41.Make astrocyte singularity copatiable and for customized config.Add citation.Reduce cores for fastqc to 3containerizecontainerizeRemove queue from mkfastq processAdd new gudmap aws batch queues to pipelineUpdate image versionsMerge branch 'cellranger-4.0.0_ref-2020A' into 'containerize'Merge branch 'containerize' into 'cellranger-4.0.0_ref-2020A'Remove modulesremove standard profilesrecontaineraize