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Add References Reort and Markdown file; Update README file

Closed Jeremy Mathews requested to merge 10-addReferenceMultiQC into develop
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### References
1. **python**:
* Anaconda (Anaconda Software Distribution, [https://anaconda.com](https://anaconda.com))
2. **pigz**
* pigz [https://zlib.net/pigz/](https://zlib.net/pigz/)
3. **cellranger**
* Cellranger mkfastq [https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/mkfastq](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/mkfastq)
4. **fastqc**
* fastqc [https://www.bioinformatics.babraham.ac.uk/projects/fastqc/](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/)
5. **MultiQc**:
* Ewels P., Magnusson M., Lundin S. and Käller M. 2016. MultiQC: Summarize analysis results for multiple tools and samples in a single report. Bioinformatics 32(19): 3047–3048. doi:[10.1093/bioinformatics/btw354](https://dx.doi.org/10.1093/bioinformatics/btw354)