Remove depreciated file output unit tests

workflow/tests/test_check_design.py

-#!/usr/bin/env python3
-#test_check_design.py
-#*
-#* --------------------------------------------------------------------------
-#* Licensed under MIT (https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_mkfastq/blob/develop/LICENSE)
-#* --------------------------------------------------------------------------
-#*
-
-import pytest
-import pandas as pd
-from io import StringIO
-import os
-
-test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
-                '/../output/misc/checkDesignFile/run/'
-
-@pytest.mark.simple1
-def test_simple1_design():
-    assert os.path.exists(os.path.join(test_output_path, 'design.checked.csv'))
-
-@pytest.mark.simple2
-def test_simple2_design():
-    assert os.path.exists(os.path.join(test_output_path, 'design.checked.csv'))    
\ No newline at end of file

workflow/tests/test_fastqc.py

-#!/usr/bin/env python3
-#test_fastq.py
-#*
-#* --------------------------------------------------------------------------
-#* Licensed under MIT (https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_mkfastq/blob/develop/LICENSE)
-#* --------------------------------------------------------------------------
-#*
-
-import pytest
-import pandas as pd
-from io import StringIO
-import os
-
-test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
-                '/../output/misc/fastqc/run/'
-
-@pytest.mark.simple1
-def test_simple1_fastqc():
-    assert os.path.exists(os.path.join(test_output_path, 'cellranger-tiny-bcl-1_2_0'))
-
-@pytest.mark.simple2
-def test_simple2_fastqc():
-    assert os.path.exists(os.path.join(test_output_path, 'cellranger-tiny-bcl-1_2_0-1'))
-    assert os.path.exists(os.path.join(test_output_path, 'cellranger-tiny-bcl-1_2_0-2'))
\ No newline at end of file

workflow/tests/test_untarBCL.py

-#!/usr/bin/env python3
-#test_untarBCL.py
-#*
-#* --------------------------------------------------------------------------
-#* Licensed under MIT (https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_mkfastq/blob/develop/LICENSE)
-#* --------------------------------------------------------------------------
-#*
-
-import pytest
-import pandas as pd
-from io import StringIO
-import os
-
-test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
-                '/../output/untarBCL/'
-
-@pytest.mark.simple1
-def test_simple1_untarBCL():
-    assert os.path.exists(os.path.join(test_output_path, 'cellranger-tiny-bcl-1_2_0', 'RTAComplete.txt'))
-
-@pytest.mark.simple2
-def test_simple2_untarBCL():
-    assert os.path.exists(os.path.join(test_output_path, 'cellranger-tiny-bcl-1_2_0-1', 'RTAComplete.txt'))
-    assert os.path.exists(os.path.join(test_output_path, 'cellranger-tiny-bcl-1_2_0-2', 'RTAComplete.txt'))
\ No newline at end of file

workflow/tests/test_versions.py

-#!/usr/bin/env python3
-#test_versions.py
-#*
-#* --------------------------------------------------------------------------
-#* Licensed under MIT (https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_mkfastq/blob/develop/LICENSE)
-#* --------------------------------------------------------------------------
-#*
-
-import pytest
-import pandas as pd
-from io import StringIO
-import os
-
-test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
-                '/../output/misc/versions/run/'
-
-@pytest.mark.simple1
-def test_simple1_versions():
-    assert os.path.exists(os.path.join(test_output_path, 'versions_mqc.yaml'))
-    assert os.path.exists(os.path.join(test_output_path, 'references_mqc.yaml'))
-
-@pytest.mark.simple2
-def test_simple2_versions():
-    assert os.path.exists(os.path.join(test_output_path, 'versions_mqc.yaml'))
-    assert os.path.exists(os.path.join(test_output_path, 'references_mqc.yaml'))
\ No newline at end of file