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Commit ef15575a authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Update CHANGELOG.md

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# v1.3.1 (in development)
**User Facing**
**Background**
* Add multiqc output to atrifacts
*Known Bugs*
* cellranger mkfastq will not accept spaces in path for run param even if quoted, issue raised on 10XGenomics/cellranger github issue [#31](https://github.com/10XGenomics/cellranger/issues/31)
* note: 10x doesn't check github issues, emailed instead
* note: pipeline checks for spaces and exits prematurely if found
* If multiple flowcells (tar'd) files are inputted then there will be multiple fastq's by the same name, currently dealing with that name conflict is not tractable
* note: if multiple bcl files are detected then cellranger_count design file is not created
# v1.3.0
**User Facing**
* Change Cellranger Version to 3.1.0
* Fix countDesign to take multiple samples
* Add MIT License
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