Add process config for countDesign

workflow/conf/biohpc.config

@@ -5,27 +5,24 @@ process {
 
   // Process specific configuration
   withLabel:checkDesignFile {
-    module = ['python/3.6.1-2-anaconda']
     executor = 'local'
   }
   withLabel:untarBCL {
-    module = ['pigz/2.4']
     queue = 'super'
   }
   withLabel:mkfastq {
-    module = ['cellranger/3.1.0', 'bcl2fastq/2.19.1']
     queue = '128GB,256GB,256GBv1,384GB'
   }
+  withLabel:countDesign {
+    executor = 'local'
+  }
   withLabel:fastqc {
-    module = ['fastqc/0.11.5', 'parallel']
     executor = 'super'
   }
   withLabel:versions {
-    module = ['python/3.6.1-2-anaconda', 'cellranger/3.0.2', 'bcl2fastq/2.19.1', 'fastqc/0.11.5']
     executor = 'local'
   }
   withLabel:multiqc {
-    module = ['multiqc/1.7']
     executor = 'local'
   }
 }

workflow/nextflow.config

@@ -23,6 +23,9 @@ process {
   withLabel:mkfastq {
     container = 'docker://bicf/cellranger3.1.0:1.0'
   }
+  withLabel:countDesign {
+    container = 'docker://bicf/bicfbase:1.4'
+  }
   withLabel:fastqc {
     module = ['fastqc/0.11.5', 'parallel']
   }