Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
C
cellranger_mkfastq
Manage
Activity
Members
Labels
Plan
Issues
7
Issue boards
Milestones
Iterations
Wiki
Requirements
Code
Merge requests
1
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Locked files
Build
Pipelines
Jobs
Pipeline schedules
Test cases
Artifacts
Deploy
Releases
Container Registry
Operate
Environments
Monitor
Incidents
Service Desk
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Code review analytics
Issue analytics
Insights
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
BICF
Astrocyte
cellranger_mkfastq
Commits
6a95b60c
Commit
6a95b60c
authored
5 years ago
by
Gervaise Henry
3
Browse files
Options
Downloads
Patches
Plain Diff
Update README.md
parent
4d89c416
Branches
Branches containing commit
Tags
Tags containing commit
1 merge request
!41
Develop
Pipeline
#3693
passed with stages
in 1 minute and 32 seconds
Changes
1
Pipelines
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
README.md
+5
-0
5 additions, 0 deletions
README.md
with
5 additions
and
0 deletions
README.md
+
5
−
0
View file @
6a95b60c
...
...
@@ -37,6 +37,7 @@ To Run:
*
column 2 = "Sample" (sample name)
*
column 3 = "Index" (10x sample index barcode, eg SI-GA-A1)
*
can have repeated "Sample" if there are multiple fastq R1/R2 pairs for the samples
*
can be downloaded
[
HERE
](
https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_mkfastq/blob/master/docs/design.csv
)
*
eg:
**--designFile '/project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_mkfastq/simple/cellranger-tiny-bcl-simple-1_2_0.csv'**
*
**--outDir**
*
optional output directory for run
...
...
@@ -50,3 +51,7 @@ To Run:
| Lane | Sample | Index |
|------|-------------|-----------|
|
*
| test_sample | SI-P03-C9 |
[
**CHANGELOG**
](
https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_mkfastq/blob/develop/CHANGELOG.md
)
This diff is collapsed.
Click to expand it.
Gervaise Henry
@ghenry
mentioned in commit
2e5d6274
·
5 years ago
mentioned in commit
2e5d6274
mentioned in commit 2e5d62745772b9c2aa5dccbec52cf510135803d3
Toggle commit list
Gervaise Henry
@ghenry
mentioned in merge request
!27 (merged)
·
5 years ago
mentioned in merge request
!27 (merged)
mentioned in merge request !27
Toggle commit list
Gervaise Henry
@ghenry
mentioned in commit
6ce6cdcc
·
5 years ago
mentioned in commit
6ce6cdcc
mentioned in commit 6ce6cdcc19ff8501f9089c12b44f74236212e52a
Toggle commit list
Preview
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment