fix output file check to astrocyte output

workflow/tests/test_check_design.py

@@ -6,7 +6,7 @@ from io import StringIO
 import os
 
 test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
-                '/../../test/misc/checkDesignFile/*/'
+                '/../output/misc/checkDesignFile/**/'
 
 @pytest.mark.design
 def test_design():

workflow/tests/test_fastqc.py

@@ -6,10 +6,10 @@ from io import StringIO
 import os
 
 test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
-                '/../../test/misc/fastqc/**/**/'
+                '/../output/misc/fastqc/**/**/'
 
 @pytest.mark.fastqc
 def test_fastqc():
-    fastqcs = glob.glob('/../../test/misc/fastqc/*/*/*fastqc.zip', recursive=True)
+    fastqcs = glob.glob('/../output/misc/fastqc/*/*/*fastqc.zip', recursive=True)
     for f in fastqcs:
         assert os.path.exists(os.path.join(test_output_path, f))

workflow/tests/test_mkfastq.py

@@ -7,10 +7,10 @@ import os
 import glob
 
 test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
-		'/../../test/mkfastq/**/outs/fastq_path/**/**/'
+		'/../output/mkfastq/**/outs/fastq_path/**/**/'
 
 @pytest.mark.mkfastq
 def test_mkfastq():
-    fastqcs = glob.glob('/../../test/mkfastq/*/outs/fastq_path/*/*/*.fastq.gz', recursive=True)
+    fastqcs = glob.glob('/../output/mkfastq/*/outs/fastq_path/*/*/*.fastq.gz', recursive=True)
     for f in fastqcs:
         assert os.path.exists(os.path.join(test_output_path, f))

workflow/tests/test_multiqc.py

@@ -6,7 +6,7 @@ from io import StringIO
 import os
 
 test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
-                '/../../test/multiqc/**/'
+                '/../output/multiqc/**/'
 
 @pytest.mark.multiqc
 def test_multiqc():

workflow/tests/test_untarBCL.py

@@ -6,7 +6,7 @@ from io import StringIO
 import os
 
 test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
-                '/../../test/untarBCL/**/'
+                '/../output/untarBCL/**/'
 
 @pytest.mark.untarBCL
 def test_untarBCL():

workflow/tests/test_versions.py

@@ -6,7 +6,7 @@ from io import StringIO
 import os
 
 test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
-                '/../../test/misc/versions/**/'
+                '/../output/misc/versions/**/'
 
 @pytest.mark.versions
 def test_versions():