Commit 21bde8f6 authored by Gervaise Henry's avatar Gervaise Henry 🤠
Browse files

Fix configs

parent 1d6fd7f0
Pipeline #7317 failed with stages
in 7 minutes and 59 seconds
profiles {
standard {
includeConfig 'workflow/config/biohpc.config'
}
biohpc_local {
includeConfig 'workflow/config/biohpc_local.config'
}
aws_ondemand {
includeConfig 'workflow/config/aws_ondemand.config'
}
aws_spot {
includeConfig 'workflow/config/aws_spot.config'
}
}
trace {
enabled = true
file = 'pipeline_trace.txt'
fields = 'task_id,native_id,process,name,status,exit,submit,start,complete,duration,realtime,%cpu,%mem,rss'
}
timeline {
enabled = true
file = 'timeline.html'
}
report {
enabled = true
file = 'report.html'
}
tower {
enabled = true
accessToken = '3ade8f325d4855434b49aa387421a44c63e3360f'
}
manifest {
homePage = 'https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_mkfastq'
description = 'This pipeline is a wrapper for the cellranger mkfastq tool from 10x Genomics (which uses Illuminas bcl2fastq). It takes demultiplexes samples from 10x Genomics Single Cell Gene Expression libraries into fastqs.'
mainScript = 'main.nf'
version = '2.0.0'
nextflowVersion = '>=0.31.0'
}
\ No newline at end of file
profiles {
standard {
includeConfig 'conf/biohpc.config'
includeConfig 'configs/biohpc.config'
}
biohpc_local {
includeConfig 'conf/biohpc_local.config'
includeConfig 'configs/biohpc_local.config'
}
aws_ondemand {
includeConfig 'conf/aws_ondemand.config'
includeConfig 'configs/aws_ondemand.config'
}
aws_spot {
includeConfig 'conf/aws_spot.config'
includeConfig 'configs/aws_spot.config'
}
}
......@@ -36,8 +36,8 @@ tower {
manifest {
homePage = 'https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_mkfastq'
description = 'This pipeline is a wrapper for the cellranger mkfastq tool from 10x Genomics (which uses Illuminas bcl2fastq). It takes demultiplexes samples from 10x Genomics Single Cell Gene Expression libraries into fastqs.'
description = 'This pipeline is a wrapper for the cellranger mkfastq tool from 10x Genomics (which uses Illuminas bcl2fastq). It takes bcls and demultiplexes samples from 10x Genomics Single Cell Gene Expression libraries into fastqs.'
mainScript = 'main.nf'
version = '2.0.0'
version = '2.0.0-indev'
nextflowVersion = '>=0.31.0'
}
\ No newline at end of file
}
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