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Gervaise Henry authored19efe6f2
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CHANGELOG.md 3.47 KiB
v1.4.0 (in development)
UserFacing
- Check Design File for spaces in name and file contents
- Update design example, README, and astrocyte.yml with current barcode IDs
- Remove unnecessary intermediate process files
Background
- Add Nextflow Tower integration into CI (GHH's profile)
Known Bugs
- cellranger mkfastq will not accept spaces in path for run param even if quoted, issue raised on 10XGenomics/cellranger github issue #31
- note: 10x doesn't check github issues, emailed instead
- note: pipeline checks for spaces and exits prematurely if found
- If multiple flowcells (tar'd) files are inputted then there will be multiple fastq's by the same name, currently dealing with that name conflict is not tractable
- note: if multiple bcl files are detected then cellranger_count design file is not created
v1.3.1
User Facing
- Change Cellranger Version to 3.1.0
- Fix countDesign to take multiple samples
- Add MIT License
- Check Design File for spaces in name and file contents
- Update design example, README, and astrocyte.yml with current barcode IDs
Background
- Add CI artifacts
- Add Nextflow Tower integration into CI (GHH's profile)
Known Bugs
- cellranger mkfastq will not accept spaces in path for run param even if quoted, issue raised on 10XGenomics/cellranger github issue #31
- note: 10x doesn't check github issues, emailed instead
- note: pipeline checks for spaces and exits prematurely if found
- If multiple flowcells (tar'd) files are inputted then there will be multiple fastq's by the same name, currently dealing with that name conflict is not tractable
- note: if multiple bcl files are detected then cellranger_count design file is not created
v1.2.0
User Facing
- Add references to of tools to mutiQC report
- Add BICF details to multiqc report
- Create cellranger_count design file (if only 1 flowcell is inputted)
Background
- Add DOI (develop branch)
- Add changelog as link to astrocyte docs (master branch)
- Update example design file link in astrocyte docs (master branch)
- Check tarballed bcl directory for spaces and exit if it contains one...cellranger mkfastq cannot handle spaces (develop branch)
- Move untar (including space check) to bash script
- Add Jeremy Mathews to author list
- Apply style guide
- Add pytests for ouptuts
Known Bugs