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Astrocyte
cellranger_count
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1
Insatll optparse if not present
Fix CI
Fix CI
Git module and container unit tests for seurat
Update configs
Update readme for vizFiles param
Only run downstreamViz on param
Change output of seurat objects
Add Seurat version to report and fix Seurat itteration
Add downstreamViz processes to configs
Add downstreamViz (seurat) generation
Merge branch 'cellranger-4.0.0_ref-2020A' into '50-seurat.object'
Fix module/container artifact paths
Remove periods from module/container unit test ids
Remove underscores from module/container unit test ids
Indevidualize module/container unit test run names
Add split unit tests for modules and containers
Finish fixing configs
Fix configs and refs
Fix configs
Fix expectcells for 400
Fix reflocation for 400
Add count400 to configs
Add cellranger 4.0.0 toci
Update CI for 4.0.0/2020-A
Add cellranger 4.0.0
Merge branch 'develop' into 'master'
publish_2.1.1
publish_2.1.1
Fix multi sample, local ulimit set, v2.1.1
Merge branch 'develop' into 'master'
Fix multiqc config
Fix module load and ulimits
Version 2.1.0
Fix cluster process passing
Fix version and references script passing
Copy filename_checkScript int each input for cellranger processes
Make script files inputs
Merge branch 'de-containerize' into 'develop'
Update configs folder name
Merge branch 'de-containerize' into 'develop'
Remove quiet option from nextflow run ci