Gervaise Henry
--- a/workflow/scripts/check_design.py

+ 8

− 5
+++ b/workflow/scripts/check_design.py

+ 8

− 5
 #!/usr/bin/env python3
-
-'''Check if design file is correctly formatted and matches files list.'''
+#check_design.py
+#*
+#* --------------------------------------------------------------------------
+#* Licensed under MIT (https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count/blob/develop/LICENSE)
+#* --------------------------------------------------------------------------
+#*

 import argparse
 import logging
 @@ -11,8 +15,6 @@ For more details:
        %(prog)s --help
 '''

-# SETTINGS
-
 logger = logging.getLogger(__name__)
 logger.addHandler(logging.NullHandler())
 logger.propagate = False
 @@ -61,6 +63,7 @@ def check_design_headers(design):
    
    return design

+
 def check_files(design, fastq):
    '''Check if design file has the files found.'''

 @@ -104,4 +107,4 @@ def main():
    new_design_df.to_csv('design.checked.csv', header=True, sep=',', index=False)

 if __name__ == '__main__':
-    main()
+    main()
+\ No newline at end of file