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cellranger_count
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!5
Resolve "Add cellranger 3.0.2 as option"
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Resolve "Add cellranger 3.0.2 as option"
8-cellranger3.0.2
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develop
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Gervaise Henry
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8-cellranger3.0.2
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6 years ago
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6 years ago
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workflow/main.nf
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@@ -9,7 +9,7 @@ params.designFile = "$baseDir/../test_data/design.csv"
params.genome = '/project/apps_database/cellranger/refdata-cellranger-GRCh38-1.2.0'
params.expectCells = 10000
params.forceCells = 0
params.version = 3.0.2
params.version =
'
3.0.2
'
// Define regular variables
designLocation = Channel
@@ -90,7 +90,7 @@ process count211 {
file("**/outs/**") into outPaths211
when:
version ==
211
version ==
'2.1.1'
script:
if (forceCells211 == 0){
@@ -121,7 +121,7 @@ process count301 {
file("**/outs/**") into outPaths301
when:
version ==
301
version ==
'3.0.1'
script:
if (forceCells301 == 0){
@@ -152,7 +152,7 @@ process count302 {
file("**/outs/**") into outPaths302
when:
version ==
302
version ==
'3.0.2'
script:
if (forceCells302 == 0){