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develop into 10-count.features
Merged Gervaise Henry requested to merge develop into 10-count.features
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.gitlab-ci.yml
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@@ -17,14 +17,14 @@ simple_cr2v2ref1.2.0:
simple_cr2v2ref3.0.0:
stage: integration
script:
- nextflow run workflow/main.nf --fastq = "$CI_PROJECT_DIR/test_data/v2s2r100k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/v2s2r100k/design.csv" --genome = 'GRCh38-3.0.0' --kitVersion = 'two' --version = '2.1.1'
- nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/v2s2r100k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/v2s2r100k/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'two' --version '2.1.1'
simple_cr3v2ref3.0.0:
stage: integration
script:
- nextflow run workflow/main.nf --fastq = "$CI_PROJECT_DIR/test_data/v2s2r100k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/v2s2r100k/design.csv" --genome = 'GRCh38-3.0.0' --kitVersion = 'two' --version = '3.0.2'
- nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/v2s2r100k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/v2s2r100k/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'two' --version '3.0.2'
simple_cr3v3ref3.0.0:
stage: integration
script:
- nextflow run workflow/main.nf --fastq = "$CI_PROJECT_DIR/test_data/v3s2r100k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/v3s2r100k/design.csv" --genome = 'GRCh38-3.0.0' --kitVersion = 'three' --version = '3.0.2'
- nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/v3s2r100k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/v3s2r100k/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'three' --version '3.0.2'