Commits · af541f001cc0c78c91af74f8fc5ed367356a5d23 · BICF / Astrocyte / cellranger_count

Mar 21, 2019
- Minor change to .gitignore · af541f00
  Gervaise Henry authored 6 years ago
  
  af541f00
- Make astrocyte parameter a select on astrocyte form · 145f016c
  David Trudgian authored 6 years ago
  
  145f016c
- Fix astrocyte param for implicit boolean conversion · cf9d3be8
  David Trudgian authored 6 years ago
  
  cf9d3be8
Mar 12, 2019
- Merge branch '14-ci' into 'develop' · 60f859d1
  Gervaise Henry authored 6 years ago
```
Resolve "Develop CI"

Closes #14

See merge request !21
```
  60f859d1
- Add module loads to processes in main.nf until custom configs fixed in astrocyte · b965b5d4
  Gervaise Henry authored 6 years ago
  
  b965b5d4
- Merge branch 'master' into 'develop' · 1e4dc79c
  Gervaise Henry authored 6 years ago
```
Master

See merge request !20
```
  1e4dc79c
- Stop run stage of ci for tags · d0fdbc46
  Gervaise Henry authored 6 years ago
  
  d0fdbc46
Mar 11, 2019
- Fix mouse ref for ci · 02319298
  Gervaise Henry authored 6 years ago
  
  02319298
- Fix test data folder · 9a298b46
  Gervaise Henry authored 6 years ago
  
  9a298b46
- Drop run ci to 2 · cbb753a1
  Gervaise Henry authored 6 years ago
  
  cbb753a1
- Merge branch 'master' into '14-ci' · 3584f8ba
  Gervaise Henry authored 6 years ago
```
Master

See merge request !19
```
  3584f8ba
- Add astrocyte check · 110bab86
  Gervaise Henry authored 6 years ago
  
  110bab86
- Fix astrocyte yml · 4caad35a
  Gervaise Henry authored 6 years ago
  
  4caad35a
- Merge branch 'develop' into 'master' · 27127abe
  Gervaise Henry authored 6 years ago
```
Develop

See merge request !18
```
  27127abe
- Merge branch '13-congig.params' into 'develop' · d429a220
  Gervaise Henry authored 6 years ago
```
Resolve "Add params from biohpc.config into main.nf"

Closes #13

See merge request !17
```
  d429a220
- Fix param erro · f236a41e
  Gervaise Henry authored 6 years ago
  
  f236a41e
- Put config params into main.nf for astrocyte · eae028c1
  Gervaise Henry authored 6 years ago
  
  eae028c1
- Copy memory requirement to main.nf for astrocyte · 745f08e0
  Gervaise Henry authored 6 years ago
  
  745f08e0
Mar 10, 2019
- Merge branch 'develop' into 'master' · 6ef47c9a
  Gervaise Henry authored 6 years ago
```
Develop

See merge request !16
```
  6ef47c9a
- Merge branch '3-instructions' into 'develop' · 1360363e
  Gervaise Henry authored 6 years ago
```
Resolve "Make instructions"

Closes #3

See merge request !15
```
  1360363e
- Merge branch '12-full.path.genomeLocation' into 'develop' · 4a6e9492
  Gervaise Henry authored 6 years ago
```
Resolve "Make param.genomeLocation have full path"

Closes #12

See merge request !14
```
  4a6e9492
- Update README.md · a5c2d05d
  Gervaise Henry authored 6 years ago
  
  a5c2d05d
- Update README.md · d107254e
  Gervaise Henry authored 6 years ago
  
  d107254e
- Change concatenated genomeLocation to genomeLocationFull · dcec356b
  Gervaise Henry authored 6 years ago
  
  dcec356b
- Change params.genomeLocation to concatenate with params.genome · 73a49881
  Gervaise Henry authored 6 years ago
  
  73a49881
- Remove = from .gitlab-ci.yml · 51737889
  Gervaise Henry authored 6 years ago
  
  51737889
- Update astrocyte_pkg.yml to reflect kitVersion param change · f037c9a7
  Gervaise Henry authored 6 years ago
  
  f037c9a7
- Add/update CI with simple tests for kit v 2 and 3, ref v 1.2.0 and 3.0.0, cellranger v 2 and 3 · efbc8c59
  Gervaise Henry authored 6 years ago
  
  efbc8c59
- Update .gitignore with nextflow analysis folders in root · 8b8d2d1e
  Gervaise Henry authored 6 years ago
  
  8b8d2d1e
- Add nextflow.config to pipeline root folder · 76d6ec90
  Gervaise Henry authored 6 years ago
  
  76d6ec90
- Change kitVersion from numeric to string value · 9fc2b894
  Gervaise Henry authored 6 years ago
  
  9fc2b894
Mar 05, 2019
- Merge branch '11-10x.kit.version' into 'develop' · fd2352e2
  Gervaise Henry authored 6 years ago
```
Resolve "Add parameter for 10x kit version"

Closes #11

See merge request !12
```
  fd2352e2
- Add 10x chemistry version as option to address #11 · 735fdf18
  Gervaise Henry authored 6 years ago
  
  735fdf18
- Fix indent in .gitlab-ci.yml · e0ada3da
  Gervaise Henry authored 6 years ago
  
  e0ada3da
- Link design file from testdata for CI · 68345f57
  Gervaise Henry authored 6 years ago
  
  68345f57
- Merge branch '4-output.folder' into 'develop' · 6cb1be4d
  Gervaise Henry authored 6 years ago
```
Resolve "Create output directory option"

Closes #4

See merge request !11
```
  6cb1be4d
- Add cli parameter option for output folder to address #4 · 8fc88d18
  Gervaise Henry authored 6 years ago
  
  8fc88d18
Mar 04, 2019
- Update gitignore · 6905cdca
  Gervaise Henry authored 6 years ago
  
  6905cdca
- Merge branch '7-fix.config.mem' into 'develop' · 6d12da60
  Gervaise Henry authored 6 years ago
```
Resolve "Fix config file"

Closes #7

See merge request !10
```
  6d12da60
- Merge branch '2-ref.genome.folder' into 'develop' · 5db938dc
  Gervaise Henry authored 6 years ago
```
Resolve "Remove reference genome full folder"

Closes #2

See merge request !9
```
  5db938dc