Skip to content
Snippets Groups Projects
Commit a70eaaf3 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
Browse files

Force mkdir and ln in CI

parent 91df3161
Branches
Tags
2 merge requests!53Develop,!38Force mkdir and ln in CI
Pipeline #3708 passed with stages
in 30 minutes and 28 seconds
Hide whitespace changes
Inline Side-by-side
Showing
with 5 additions and 5 deletions
.gitlab-ci.yml
+ 5
− 5
View file @ a70eaaf3
......@@ -3,11 +3,11 @@ before_script:
- module load python/3.6.1-2-anaconda
- module load nextflow/0.31.1_Ignite
- mkdir test_data/hu.v2s1r500
- mkdir test_data/mu.v2s2r10k
- mkdir test_data/hu.v3s2r10k
- ln -s /project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_count/hu.v2s1r500/* test_data/hu.v2s1r500/
- ln -s /project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_count/mu.v2s2r10k/* test_data/mu.v2s2r10k/
- ln -s /project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_count/hu.v3s2r10k/* test_data/hu.v3s2r10k/
- mkdir -p test_data/mu.v2s2r10k
- mkdir -p test_data/hu.v3s2r10k
- ln -sfn /project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_count/hu.v2s1r500/* test_data/hu.v2s1r500/
- ln -sfn /project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_count/mu.v2s2r10k/* test_data/mu.v2s2r10k/
- ln -sfn /project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_count/hu.v3s2r10k/* test_data/hu.v3s2r10k/
stages:
- astrocyte
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment