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Commit 692b7962 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Merge branch '29-VersionCompatibility' into 'develop'

Resolve "Test for kitVersion=3 and version=2.1.1 and exit if true"

Closes #29

See merge request !52
parents 14599fcc 9ff49cb2
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2 merge requests!53Develop,!52Resolve "Test for kitVersion=3 and version=2.1.1 and exit if true"
Pipeline #4500 passed with stages
in 37 minutes and 32 seconds
......@@ -17,6 +17,11 @@ params.outDir = "${baseDir}/output"
params.multiqcConf = "${baseDir}/conf/multiqc_config.yaml"
params.references = "${baseDir}/../docs/references.md"
if (params.kitVersion == "three" && params.version == '2.1.1') {
print("Cellranger Version 2.1.1 requires kitVersion 2")
System.exit(32)
}
// Assign variables if astrocyte
if (params.astrocyte) {
print("Running under astrocyte")
......@@ -59,7 +64,6 @@ outDir = params.outDir
multiqcConf = params.multiqcConf
references = params.references
process checkDesignFile {
tag "${name}"
......
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