Merge branch 'develop' into 'master'

Update CHANGELOG.md, workflow/main.nf, workflow/nextflow.config files

See merge request !79

CHANGELOG.md

-# v2.2.0-indev
+# v2.2.0
 **User Facing**
 * Add cellranger version 4.0.0
 * Add references version 2020-A (GRCh38, mm10, mix)

workflow/main.nf

@@ -64,7 +64,7 @@ if (params.astrocyte) {
 params.genomeLocationFull = params.genomeLocation+params.genome
 
 // Define variables from input
-pipelineVersion = "2.2.0-indev"
+pipelineVersion = "2.2.0"
 name = params.name
 designLocation = Channel
   .fromPath(params.designFile)

workflow/nextflow.config

@@ -48,6 +48,6 @@ manifest {
   homePage = 'https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count'
   description = 'This pipeline is a wrapper for the cellranger count tool from 10x Genomics. It takes fastq files from 10x Genomics Single Cell Gene Expression libraries, performs alignment, filtering, barcode counting, and UMI counting. It uses the Chromium cellular barcodes to generate gene-barcode matrices, determine clusters, and perform gene expression analysis.'
   mainScript = 'main.nf'
-  version = '2.2.0-indev'
+  version = '2.2.0'
   nextflowVersion = '>=0.31.0'
 }