Commit 5c20220d authored by Gervaise Henry's avatar Gervaise Henry 🤠
Browse files

Merge branch 'develop' into 'master'

Update CHANGELOG.md, workflow/main.nf, workflow/nextflow.config files

See merge request !79
parents d908d0bc ee1d7b6d
Pipeline #7901 passed with stages
in 8 minutes and 9 seconds
# v2.2.0-indev
# v2.2.0
**User Facing**
* Add cellranger version 4.0.0
* Add references version 2020-A (GRCh38, mm10, mix)
......
......@@ -64,7 +64,7 @@ if (params.astrocyte) {
params.genomeLocationFull = params.genomeLocation+params.genome
// Define variables from input
pipelineVersion = "2.2.0-indev"
pipelineVersion = "2.2.0"
name = params.name
designLocation = Channel
.fromPath(params.designFile)
......
......@@ -48,6 +48,6 @@ manifest {
homePage = 'https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count'
description = 'This pipeline is a wrapper for the cellranger count tool from 10x Genomics. It takes fastq files from 10x Genomics Single Cell Gene Expression libraries, performs alignment, filtering, barcode counting, and UMI counting. It uses the Chromium cellular barcodes to generate gene-barcode matrices, determine clusters, and perform gene expression analysis.'
mainScript = 'main.nf'
version = '2.2.0-indev'
version = '2.2.0'
nextflowVersion = '>=0.31.0'
}
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