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Commit 3952384b authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Update .gitlab-ci.yml

parent 01a3b1e3
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1 merge request!53Develop
Pipeline #3719 passed with stages
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......@@ -18,11 +18,15 @@ astrocyte_check:
stage: astrocyte
script:
- astrocyte_cli check ../cellranger_count
artifacts:
expire_in: 2 days
run_hu.cr3v2ref3.0.0:
stage: simple
script:
- nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v2s1r500/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v2s1r500/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'two' --version '3.0.2'
artifacts:
expire_in: 2 days
run_mu.cr2v2ref1.2.0:
stage: detailed
......@@ -30,6 +34,8 @@ run_mu.cr2v2ref1.2.0:
- tags
script:
- nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/mu.v2s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/mu.v2s2r10k/design.csv" --genome 'mm10-1.2.0' --kitVersion 'auto' --version '2.1.1'
artifacts:
expire_in: 2 days
run_hu.cr3v3ref3.0.0:
stage: detailed
......@@ -37,3 +43,5 @@ run_hu.cr3v3ref3.0.0:
- tags
script:
- nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'auto' --version '3.0.2'
artifacts:
expire_in: 2 days
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