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Created with Raphaël 2.2.031Jul2928129Jun2621191817161512111098532129May282726191413128713Apr6131Mar26242320228Feb272524211918171211107Jan65432131Dec3029272620191817161312111096438Aug31Jul3029Jun2827262519Merge branch 'dev' into 'master'publish_2.0.4 m…publish_2.0.4 masterUpdate to publish 2.0.4 to fix memory issue.devdevMerge branch '43-long_read_fix' into 'dev'Update configuration for queue to fix large number of reads.Merge branch '41-astrocyte-cli' into 'dev'Update changlog for astrocyte support.Add in astrocyte 0.3.1 test.update readme.fix file path.publish_2.0.3publish_2.0.3Fix path to design file so that its passed ocorrectly for astrocyte.Fix design file name.Merge branch '40-astrocyte_fixes' into 'master'Fix bwa Index name.Fix typosUpdate changelog with version.Clean up and fix astrocyte configurations.Merge branch '39-astrocyte_cli' into 'master'Move logic ahead of redo for blacklist.move up code to be generalizable.Fix astrocyte bedtools version. Also consolidated blacklist code.Fix json.Fix pipeline.Fix track pipeline.Added in pipeline tracker as well as testing for astrocyte.fix references.Fix conf file syntax.Fix version of cli.update changelog version.Update config.Update to include astrocyte config tests and references.Merge branch '32-annotatePeaks' into 'master'Resolved merge conflictsfix errorsMerge branch '31-BlacklistRegions' into 'master'Merge branch '27-FragSizeDist' into 'master'fix errorsMerge branch 'master' into '31-BlacklistRegions'fix SE testMerge branch '31-BlacklistRegions' of git.biohpc.swmed.edu:BICF/Astrocyte/atacseq_analysis into 31-BlacklistRegionsfix testing error