fix pool and pseudo

workflow/scripts/pool_and_psuedoreplicate.py

@@ -222,7 +222,7 @@ def main():
 
         # Update tagAlign with single end data
         if paired:
-            design_new_df['tag_align'] = design_new_df['se_tag_align']
+            design_new_df['tag_align'] = design_new_df['seTagAlign']
         design_new_df.drop(labels='seTagAlign', axis=1, inplace=True)
 
         design_new_df['replicate'] = design_new_df['replicate'].astype(str)
@@ -254,6 +254,7 @@ def main():
         design_new_df.drop(labels='index', axis=1, inplace=True)
 
     else:
+
         # Make pool of replicates
         replicate_files = design_df.tag_align.unique()
         experiment_id = design_df.at[0, 'experiment_id']
@@ -285,8 +286,7 @@ def main():
 
         # Update tagAlign with single end data
         if paired:
-            design_new_df['tag_align'] = design_new_df['se_tag_align']
-
+            design_new_df['tag_align'] = design_new_df['seTagAlign']
         design_new_df.drop(labels='seTagAlign', axis=1, inplace=True)
 
         # Check controls against cutoff_ratio