Merge branch '20-FixPoolandPseudo' into 'master' (d3cffa0a) · Commits · BICF / Astrocyte / atacseq_analysis · GitLab

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BICF
Astrocyte
atacseq_analysis
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d3cffa0a

Commit d3cffa0a authored 5 years ago by

Venkat Malladi

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Merge branch '20-FixPoolandPseudo' into 'master'

Resolve "Fix Pool and Pseudoreps"

Closes #19 and #20

See merge request !12

parents 522e99c5 586ddd0c

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1 merge request!12Resolve "Fix Pool and Pseudoreps"

Pipeline #5505 passed with stages

in 10 hours and 52 seconds

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CHANGELOG.md 1 addition, 0 deletions

CHANGELOG.md
README.md 5 additions, 2 deletions

README.md
docs/xcor_header.txt 17 additions, 0 deletions

docs/xcor_header.txt
workflow/conf/biohpc.config 1 addition, 1 deletion

workflow/conf/biohpc.config
workflow/main.nf 80 additions, 47 deletions

workflow/main.nf
workflow/scripts/convert_reads.py 6 additions, 2 deletions

workflow/scripts/convert_reads.py
workflow/scripts/experiment_design.py 1 addition, 31 deletions

workflow/scripts/experiment_design.py
workflow/scripts/pool_and_psuedoreplicate.py 51 additions, 93 deletions

workflow/scripts/pool_and_psuedoreplicate.py
workflow/scripts/xcor.py 45 additions, 11 deletions

workflow/scripts/xcor.py
workflow/tests/test_pool_and_psuedoreplicate.py 8 additions, 7 deletions

workflow/tests/test_pool_and_psuedoreplicate.py
workflow/tests/test_xcor.py 26 additions, 15 deletions

workflow/tests/test_xcor.py

with 241 additions and 209 deletions

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