Commit ae1c1465 authored by Holly Ruess's avatar Holly Ruess

fix SE test

parent 7b7dc0cb
Pipeline #7090 failed with stages
in 469 minutes and 17 seconds
......@@ -20,7 +20,7 @@ single_end_human:
- branches
- master
script:
- nextflow run workflow/main.nf
- NXF_OPTS="-Dleveldb.mmap=false" nextflow run workflow/main.nf
- pytest -m singleend_human
......@@ -30,5 +30,5 @@ paired_end_mouse:
- branches
- master
script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR451NAE_PE.txt" --genome 'GRCm38' --pairedEnd true --blacklist true
- NXF_OPTS="-Dleveldb.mmap=false" nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR451NAE_PE.txt" --genome 'GRCm38' --pairedEnd true --blacklist true
- pytest -m pairedend_mouse
......@@ -18,7 +18,7 @@ def test_annotation_singleend_human():
annotation_file = test_output_path + 'ENCSR265ZXX.chipseeker_annotation.tsv'
assert os.path.exists(annotation_file)
assert utils.count_lines(annotation_file) >= 116265
assert utils.count_lines(annotation_file) >= 116163
@pytest.mark.pairedend_mouse
......
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