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atacseq_analysis
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BICF
Astrocyte
atacseq_analysis
Commits
8a8e66b5
Commit
8a8e66b5
authored
Jun 12, 2020
by
Venkat Malladi
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fix references.
parent
3193796e
Pipeline
#7180
passed with stages
in 427 minutes and 44 seconds
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1
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1
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1 changed file
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4 additions
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5 deletions
+4
-5
workflow/tests/test_generate_software_references.py
workflow/tests/test_generate_software_references.py
+4
-5
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workflow/tests/test_generate_software_references.py
View file @
8a8e66b5
...
...
@@ -17,7 +17,7 @@ def test_software_references_singleend_human():
software_references
=
os
.
path
.
join
(
test_output_path
,
'software_references_mqc.yaml'
)
with
open
(
software_references
,
'r'
)
as
stream
:
data_loaded
=
yaml
.
load
(
stream
)
assert
len
(
data_loaded
[
'data'
].
split
(
'<ul>'
))
==
1
5
assert
len
(
data_loaded
[
'data'
].
split
(
'<ul>'
))
==
1
6
multiqc_report
=
os
.
path
.
join
(
test_output_path
,
'multiqc_report.html'
)
html_file
=
open
(
multiqc_report
,
'r'
)
...
...
@@ -25,7 +25,7 @@ def test_software_references_singleend_human():
multiqc_html
=
BeautifulSoup
(
source_code
,
'html.parser'
)
references
=
multiqc_html
.
find
(
id
=
"mqc-module-section-Software_References"
)
assert
references
is
not
None
assert
len
(
references
.
find_all
(
'ul'
))
==
1
4
assert
len
(
references
.
find_all
(
'ul'
))
==
1
5
...
...
@@ -35,7 +35,7 @@ def test_software_references_pairedend_mouse():
software_references
=
os
.
path
.
join
(
test_output_path
,
'software_references_mqc.yaml'
)
with
open
(
software_references
,
'r'
)
as
stream
:
data_loaded
=
yaml
.
load
(
stream
)
assert
len
(
data_loaded
[
'data'
].
split
(
'<ul>'
))
==
1
5
assert
len
(
data_loaded
[
'data'
].
split
(
'<ul>'
))
==
1
6
multiqc_report
=
os
.
path
.
join
(
test_output_path
,
'multiqc_report.html'
)
html_file
=
open
(
multiqc_report
,
'r'
)
...
...
@@ -43,5 +43,4 @@ def test_software_references_pairedend_mouse():
multiqc_html
=
BeautifulSoup
(
source_code
,
'html.parser'
)
references
=
multiqc_html
.
find
(
id
=
"mqc-module-section-Software_References"
)
assert
references
is
not
None
assert
len
(
references
.
find_all
(
'ul'
))
==
14
assert
len
(
references
.
find_all
(
'ul'
))
==
15
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