fix pool and pseuod

workflow/scripts/xcor.py

@@ -27,7 +27,7 @@ logger.setLevel(logging.INFO)
 # strip_extensions strips from the right inward, so
 # the expected right-most extensions should appear first (like .gz)
 # Modified from J. Seth Strattan
-STRIP_EXTENSIONS = ['.gz', '.tagAlign']
+STRIP_EXTENSIONS = ['.gz', '.tagAlign', '.bedse', '.bedpe']
 
 
 def get_args():

workflow/tests/test_pool_and_psuedoreplicate.py

@@ -46,7 +46,7 @@ def test_pool_and_psuedoreplicate_singleend_human():
     design_file = os.path.join(test_output_path, 'ENCSR265ZXX_ppr.tsv')
     assert os.path.exists(design_file)
     design_df = pd.read_csv(design_file, sep="\t")
-    assert design_df.shape[0] == 6
+    assert design_df.shape[0] == 7
 
 
 @pytest.mark.pairedend_mouse
@@ -59,4 +59,4 @@ def test_pool_and_psuedoreplicate_pairedend_mouse():
     design_file = os.path.join(test_output_path, 'ENCSR451NAE_ppr.tsv')
     assert os.path.exists(design_file)
     design_df = pd.read_csv(design_file, sep="\t")
-    assert design_df.shape[0] == 5
+    assert design_df.shape[0] == 6