fix pool and pseudo

workflow/scripts/xcor.py

@@ -102,7 +102,7 @@ def xcor(tag, paired):
     # Subsample tagAlign file
     number_reads = 15000000
     subsampled_tag_filename = \
-        tag_basename + ".%d.tagAlign.gz" % (numReads/1000000)
+        tag_basename + ".%d.tagAlign.gz" % (number_reads/1000000)
 
     steps = [
         'zcat %s' % (tag),

workflow/tests/test_pool_and_psuedoreplicate.py

@@ -41,15 +41,22 @@ def test_check_replicates_single(design_experiment_2):
     assert no_reps == 1
 
 
-@pytest.mark.integration
-def test_pool_and_psuedoreplicate_single_end():
+@pytest.mark.singleend_human
+def test_pool_and_psuedoreplicate_singleend_human():
     design_file = os.path.join(test_output_path, 'ENCSR265ZXX_ppr.tsv')
     assert os.path.exists(design_file)
     design_df = pd.read_csv(design_file, sep="\t")
     assert design_df.shape[0] == 6
 
 
-@pytest.mark.integration
-def test_experiment_design_paired_end():
+@pytest.mark.pairedend_mouse
+def test_experiment_design_pairedend_mouse():
     # Do the same thing for paired end data
     pass
+
+@pytest.mark.pairedend_mouse
+def test_pool_and_psuedoreplicate_pairedend_mouse():
+    design_file = os.path.join(test_output_path, 'ENCSR451NAE_ppr.tsv')
+    assert os.path.exists(design_file)
+    design_df = pd.read_csv(design_file, sep="\t")
+    assert design_df.shape[0] == 5