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Commit 5e608f93 authored by Holly Ruess's avatar Holly Ruess
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fix core dump issue

parent 8718d577
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1 merge request!25Resolve "Blacklist of regions"
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.gitlab-ci.yml
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......@@ -20,7 +20,7 @@ single_end_human:
- branches
- master
script:
- nextflow run workflow/main.nf
- NXF_OPTS="-Dleveldb.mmap=false" nextflow run workflow/main.nf
- pytest -m singleend_human
......@@ -30,5 +30,5 @@ paired_end_mouse:
- branches
- master
script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR451NAE_PE.txt" --genome 'GRCm38' --pairedEnd true --blacklist true
- NXF_OPTS="-Dleveldb.mmap=false" nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR451NAE_PE.txt" --genome 'GRCm38' --pairedEnd true --blacklist true
- pytest -m pairedend_mouse
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