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atacseq_analysis
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BICF
Astrocyte
atacseq_analysis
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3e8e46fb
There was a problem fetching the pipeline stages.
Commit
3e8e46fb
authored
6 years ago
by
Venkat Malladi
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fix syntax.
parent
237d5760
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Pipeline
#2244
failed with stages
in 7 seconds
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workflow/tests/test_experiment_qc.py
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workflow/tests/test_experiment_qc.py
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workflow/tests/test_experiment_qc.py
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View file @
3e8e46fb
...
...
@@ -9,14 +9,13 @@ import experiment_qc
test_output_path
=
os
.
path
.
dirname
(
os
.
path
.
abspath
(
__file__
))
+
\
'
/../output/experimentQC/
'
DESIGN_STRING
=
"""
sample_id
\t
experiment_id
\t
biosample
\t
factor
\t
treatment
\t
replicate
\
t
bam_reads
DESIGN_STRING
=
r
"""
sample_id\texperiment_id\tbiosample\tfactor\ttreatment\treplicate\bam_reads
A_1\tA\tLiver\None\tNone\t1\tA_1.bam
A_2\tA\tLiver\None\tNone\t2\tA_2.bam
B_1\tB\tLiver\None\tNone\t1\tB_1.bam
B_2\tB\tLiver\None\tNone\t2\tB_2.bam
"""
@pytest.fixture
def
design_bam
():
design_file
=
StringIO
(
DESIGN_STRING
)
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