Skip to content
Snippets Groups Projects
Commit 1ca0fc36 authored by Venkat Malladi's avatar Venkat Malladi
Browse files

Add in make tss scripts for mouse.

parent 3b063504
Branches
Tags
No related merge requests found
#!/bin/bash
cat gencode.gtf |
grep -P '\tgene\t' |
grep 'protein_coding' |
grep -v 'level 3' |
awk -F '[\t|\"]' '{ print $1"\t"$4"\t"$5"\t"$10"\t0\t"$7 }' |
awk -F '\t' 'BEGIN{ OFS="\t" } { if ($6=="+") { $3=$2-1; $2=$2-2 } else { $2=$3; $3=$3+1 } print }' |
sort -k1,1 -k2,2n > gencode.tss
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment