analysis/GRO_seq_TFSEE/.ipynb_checkpoints/Untitled-checkpoint.ipynb

+{
+ "cells": [],
+ "metadata": {},
+ "nbformat": 4,
+ "nbformat_minor": 2
+}

analysis/GRO_seq_TFSEE/Untitled.ipynb

+%% Cell type:code id: tags:
+
+``` python
+import pandas as pd
+```
+
+%% Cell type:code id: tags:
+
+``` python
+cluster4 = pd.read_csv('cluster_4_enhancers.csv', index_col=0)
+cluster3 = pd.read_csv('cluster_3_enhancers.csv', index_col=0)
+```
+
+%% Cell type:code id: tags:
+
+``` python
+len(set(cluster4.index))
+```
+
+%% Output
+
+    1371
+
+%% Cell type:code id: tags:
+
+``` python
+len(set(cluster3.index) - set(cluster4.index))
+```
+
+%% Output
+
+    1101
+
+%% Cell type:code id: tags:
+
+``` python
+set(cluster4.index) - set(cluster3.index)
+```
+
+%% Output
+
+    {'SSP_236665',
+     'SSP_236666',
+     'SSP_313311',
+     'SUNP_1253075',
+     'SUNP_333951',
+     'SUNP_415522',
+     'SUNP_926025'}
+
+%% Cell type:code id: tags:
+
+``` python
+2465-1101
+```
+
+%% Output
+
+    1364
+
+%% Cell type:code id: tags:
+
+``` python
+1101/2465.0
+```
+
+%% Output
+
+    0.4466531440162272
+
+%% Cell type:code id: tags:
+
+``` python
+len(cluster4.index)
+```
+
+%% Output
+
+    1371
+
+%% Cell type:code id: tags:
+
+``` python
+1371-7
+```
+
+%% Output
+
+    1364
+
+%% Cell type:code id: tags:
+
+``` python
+1364/1371.0
+```
+
+%% Output
+
+    0.9948942377826404
+
+%% Cell type:code id: tags:
+
+``` python
+```