modified config.toml for use

config.toml

@@ -13,14 +13,14 @@ title="Abundance Parser Configuration"
     #input_files=[ "/input/file1",
     #              path to file2
     #             ]
-    input_files=[]
+    input_files=["data/input/LUM1_705666-peptide.csv","data/input/LUM1_705666-peptidegroups.csv"]
     #fasta file(s) containing the protein sequence(s) to align against
-    prot_seq_fasta=[]
+    prot_seq_fasta=["data/2N4R_wt_tau.fasta","data/1N4RP301STau.fasta"]
 
 
 [output]
     #Relative or absolute path to desired output directory
-    output_directory="output/"
+    output_directory="output/mouse1yr"
 
     #this stub is prepended by the file name of the input file
     residue_output_name_stub="residueModificationAnalysis"
@@ -33,7 +33,7 @@ title="Abundance Parser Configuration"
     using_fileID_column=false
     #Title of column containing abundance. If using_fileID_column is set to
     #true, only the first entry will be used
-    abundance_col_titles=[]
+    abundance_col_titles=["Abundance"]
     calculate_peptide_modifications=true
 
     [parser_config.regex]