User Facing


  • Split non-metadata mismatch error handling proces into 2, 1 to handle fastq errors and one for species errors (BUG FIX #101)
  • Add known errors to integration CI tests (ambiguous species, trunkated fastq, R1/R2 mismatch (#103)
  • Fix pre exeuction run fails uploading of execution run RID to tracking site (#96, #97)
  • Change CI replicate count badge CI to count all execution runs that match major version

Known Bugs

  • Override params (inputBag, fastq, species) aren't checked for integrity
  • Authentication files and tokens must be active (active auth client) for the duration of the pipeline run (until long-lived token utilization included)