Merge requests · GUDMAP_RBK / RNA-seq

Merge trains

Env.ci 5 of 6 checklist items completed

!75 · created Mar 19, 2021 by Gervaise Henry v2.0.0
- Merged
- 1
- Approved
updated Mar 20, 2021
Develop

!74 · created Mar 18, 2021 by Gervaise Henry v2.0.0 env.ci
updated Mar 18, 2021
Update.containers 6 of 6 checklist items completed

!72 · created Mar 08, 2021 by Gervaise Henry v2.0.0
updated Mar 09, 2021
Fix 3 of 3 checklist items completed

!69 · created Feb 04, 2021 by Gervaise Henry v2.0.0
To Do bug confirmed data-hub pipeline
- Merged
- Approved
updated Feb 07, 2021
Develop

!68 · created Feb 01, 2021 by Gervaise Henry v2.0.0 master
updated Feb 01, 2021
Resolve "Change Single Read to Single End for submitted endness" 5 of 5 checklist items completed

!67 · created Jan 25, 2021 by Gervaise Henry v2.0.0
Test critical data-hub pipeline
- Merged
- Approved
updated Feb 01, 2021
Develop

!65 · created Jan 20, 2021 by Gervaise Henry v2.0.0 master
updated Jan 20, 2021
Resolve "samtools sort: couldn't allocate memory for bam_mem" 5 of 5 checklist items completed

!64 · created Jan 20, 2021 by Gervaise Henry v2.0.0
Doing bug critical
- Merged
- Approved
updated Jan 20, 2021
Develop

!63 · created Jan 15, 2021 by Gervaise Henry v1.0.2 master
updated Jan 15, 2021
REsolve Misspelled process name in config 5 of 5 checklist items completed

!62 · created Jan 15, 2021 by Venkat Malladi v1.0.2
To Do bug
- Merged
- 4
updated Jan 15, 2021
Develop

!61 · created Jan 14, 2021 by Gervaise Henry v1.0.1 master
updated Jan 14, 2021
Resolve "failPreExecution not running on fastq error" 9 of 9 checklist items completed

!60 · created Jan 14, 2021 by Gervaise Henry v1.0.1
To Do bug confirmed critical discussion pipeline
updated Jan 14, 2021
Fix complete/fail date tracking passing

!59 · created Jan 12, 2021 by Gervaise Henry 1.0.0 master
updated Jan 12, 2021
Prep of 1.0.0 release 11 of 12 checklist items completed

!57 · created Jan 08, 2021 by Venkat Malladi 1.0.0
Doing
updated Jan 12, 2021
Resolve "Detect error in inferMetadata for tracking" 10 of 12 checklist items completed

!56 · created Jan 07, 2021 by Gervaise Henry 1.0.0
Test
- Merged
- Approved
updated Jan 08, 2021
Resolve "Add tool version badges"

!55 · created Dec 30, 2020 by Gervaise Henry 1.0.0
Doing enhancement
updated Dec 30, 2020
Resolve "Add an option to not upload"

!54 · created Dec 14, 2020 by Gervaise Henry 1.0.0 11-deriva.upload
To Do
updated Dec 17, 2020
Resolve "process_derivaUpload" 11 of 11 checklist items completed

!53 · created Dec 14, 2020 by Gervaise Henry 1.0.0
Doing
- Merged
- 17
- Approved
updated Dec 30, 2020
Add run details to output bag

!51 · created Nov 19, 2020 by Jeremy Mathews 1.0.0
Doing
- Merged
- 7
- Approved
updated Nov 20, 2020
Add back parallel trim step. Moved fastqc step after trim. 5 of 12 checklist items completed

!50 · created Nov 12, 2020 by Venkat Malladi FUTURE Version
To Do enhancement
- Merged
- 8
- Approved
updated Nov 19, 2020