Resolve "Chunk bam for parallel tin calculation" (!26) · Merge requests · GUDMAP_RBK / RNA-seq

Merged Resolve "Chunk bam for parallel tin calculation"

45-parallelizeTin into develop

Merged Jonathan Gesell requested to merge 45-parallelizeTin into develop 5 years ago

Apr 07, 2020
- Fix nextflow/runner error, change singularity cache, and limit processes in unit ci to 20 · c0adecfd
  Gervaise Henry authored 5 years ago
  
  c0adecfd
Apr 03, 2020
- Update docs/dag.png · ab85953a
  Gervaise Henry authored 5 years ago
  
  ab85953a
Apr 02, 2020
- Fix infer.csv output · cc6ffe96
  Gervaise Henry authored 5 years ago
  
  cc6ffe96
- Deleted dag.png · a08a23e8
  Gervaise Henry authored 5 years ago
  
  a08a23e8
- Merge branch 'develop' into '45-parallelizeTin' · ca9e0973
  Gervaise Henry authored 5 years ago
```
# Conflicts:
#   workflow/rna-seq.nf
```
  ca9e0973
- Update pipeline status · 563eabd7
  Gervaise Henry authored 5 years ago
  
  563eabd7
- Update rna-seq.nf · b292ccee
  Gervaise Henry authored 5 years ago
  
  b292ccee
- Update rna-seq.nf · 862e319e
  Gervaise Henry authored 5 years ago
  
  862e319e
Apr 01, 2020
- Changed infer.tsv back to infer.csv with appropriate formatting changes. · 4346896f
  Jonathan Gesell authored 5 years ago
  
  4346896f
- Added new dag.png · e430479f
  Jonathan Gesell authored 5 years ago
  
  e430479f
Mar 30, 2020
- Corrected typo in dedup step. · 98bed3b8
  Jonathan Gesell authored 5 years ago
  
  98bed3b8
- Used betterd CHRs for tests. · 622ebfca
  Jonathan Gesell authored 5 years ago
  
  622ebfca
Mar 27, 2020
- Fixed typo · 4ba43359
  Jonathan Gesell authored 5 years ago
  
  4ba43359
- Updated inferMetadata testing script · ad41969d
  Jonathan Gesell authored 5 years ago
  
  ad41969d
- Updated inferMetadata testing script · 45e96a6b
  Jonathan Gesell authored 5 years ago
  
  45e96a6b
- Updated inferMetadata testing script · 8ce8b56e
  Jonathan Gesell authored 5 years ago
  
  8ce8b56e
- Update test_dedupReads.py · d0d886a4
  Jonathan Gesell authored 5 years ago
  
  d0d886a4
- Update test_dedupReads.py · f8ab64d0
  Jonathan Gesell authored 5 years ago
  
  f8ab64d0
- Update .gitlab-ci.yml · e90a7437
  Jonathan Gesell authored 5 years ago
  
  e90a7437
- Update .gitlab-ci.yml · 552c33bd
  Jonathan Gesell authored 5 years ago
  
  552c33bd
- Update .gitlab-ci.yml · cd097223
  Jonathan Gesell authored 5 years ago
  
  cd097223
- Update .gitlab-ci.yml · 0199c4c1
  Jonathan Gesell authored 5 years ago
  
  0199c4c1
- Update .gitlab-ci.yml · 7db849c4
  Jonathan Gesell authored 5 years ago
  
  7db849c4
- Update .gitlab-ci.yml · caeb8ea8
  Jonathan Gesell authored 5 years ago
  
  caeb8ea8
- Update .gitlab-ci.yml · 6f721d95
  Jonathan Gesell authored 5 years ago
  
  6f721d95
- Update .gitlab-ci.yml · 21ddb0dd
  Jonathan Gesell authored 5 years ago
  
  21ddb0dd
- Update test_dedupReads.py · 2321e6cc
  Jonathan Gesell authored 5 years ago
  
  2321e6cc
- Update test_dedupReads.py · 12b9d87f
  Jonathan Gesell authored 5 years ago
  
  12b9d87f
- Correction to .gitlab-ci.yml · 2e7299e2
  Jonathan Gesell authored 5 years ago
  
  2e7299e2
- Update test_dedupReads.py to include split, testing chr1, chr2, chr8 · a06578ad
  Jonathan Gesell authored 5 years ago
  
  a06578ad
- Update .gitlab-ci.yml to include splitting the BAM and BAI files. · 2ee9ebdc
  Jonathan Gesell authored 5 years ago
  
  2ee9ebdc
Mar 26, 2020
- Parallelized inferMetaData's TIN calculation. · 82bac4e7
  Jonathan Gesell authored 5 years ago
  
  82bac4e7
Mar 24, 2020
- Merge branch '44-stranded.logic' into '45-parallelizeTin' · e108c736
  Jonathan Gesell authored 5 years ago
```
Fix infer logic

See merge request !25
```
  e108c736
Mar 23, 2020
- Fix infer logic · 28850994
  Gervaise Henry authored 5 years ago
  
  28850994
Mar 20, 2020
- initial commit, untested · af133ded
  Jonathan Gesell authored 5 years ago
  
  af133ded

Resolve "Chunk bam for parallel tin calculation"

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Resolve "Chunk bam for parallel tin calculation"

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