Resolve "process_count" (!22) · Merge requests · GUDMAP_RBK / RNA-seq

Merged Resolve "process_count"

6-processCounts into develop

Merged Gervaise Henry requested to merge 6-processCounts into develop 5 years ago

Mar 20, 2020
- Updated exit message. · 5acdbca8
  Venkat Malladi authored 5 years ago
  
  5acdbca8
- Corrected typo in makeFeatureCounts test. · 7d2108a5
  Jonathan Gesell authored 5 years ago
  
  7d2108a5
- Code review changes/corrections · 28f1a97f
  Jonathan Gesell authored 5 years ago
  
  28f1a97f
Mar 19, 2020
- Reverted to using SLURM with super queue. · 47e9c3e6
  Jonathan Gesell authored 5 years ago
  
  47e9c3e6
- Changed executor to local for inferMetaData to attempt to run quicker. · 810cfffb
  Jonathan Gesell authored 5 years ago
  
  810cfffb
Mar 18, 2020
- Improved logging and removal of redundant variables. · 1e445926
  Jonathan Gesell authored 5 years ago
  
  1e445926
Mar 16, 2020
- Merge resolution · 03aa79a9
  Gervaise Henry authored 5 years ago
  
  03aa79a9
- Changed tag from 'gene_id' to 'gene_name' · 3c9c7d4d
  Jonathan Gesell authored 5 years ago
  
  3c9c7d4d
Mar 15, 2020
- Fix spelling errors · 3f71105b
  Venkat Malladi authored 5 years ago
  
  3f71105b
- Added paired end and stranded features to featureCounts. · 387290a1
  Jonathan Gesell authored 5 years ago
  
  387290a1
Mar 09, 2020
- Fix exit for tests in calculateTPM.R · 2c5bbdc1
  Gervaise Henry authored 5 years ago
  
  2c5bbdc1
- Update dag.png · 800dae10
  Gervaise Henry authored 5 years ago
  
  800dae10
- Generalize count column earlier · 35a91ea1
  Gervaise Henry authored 5 years ago
  
  35a91ea1
Mar 08, 2020
- Fix path of script for unit test · b36bb08e
  Gervaise Henry authored 5 years ago
  
  b36bb08e
- Fix docker handle in unit test · 2ab086d2
  Gervaise Henry authored 5 years ago
  
  2ab086d2
- Add unit test for makeFeatureCounts · 88c55e12
  Gervaise Henry authored 5 years ago
  
  88c55e12
- Fix tpm r filename · 9663d913
  Gervaise Henry authored 5 years ago
  
  9663d913
Mar 06, 2020
- Add ulimit to ci integration · 899957ed
  Gervaise Henry authored 5 years ago
  
  899957ed
- Add back process · 14784208
  Gervaise Henry authored 5 years ago
  
  14784208
- TEST remove count process · 96a89c3a
  Gervaise Henry authored 5 years ago
  
  96a89c3a
- Add TPM calculation to nf · d0d5114b
  Gervaise Henry authored 5 years ago
  
  d0d5114b
- Remove edgeR from calculateTPM script · 1f1c6075
  Gervaise Henry authored 5 years ago
  
  1f1c6075
- Add rscript to calculate tpm · 44e21870
  Gervaise Henry authored 5 years ago
  
  44e21870
- Added feature counts process. · 6675415d
  Jonathan Gesell authored 5 years ago
  
  6675415d

Resolve "process_count"

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Resolve "process_count"

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