references.md

References

1. python:

• Anaconda (Anaconda Software Distribution, https://anaconda.com)

2. DERIVA:

• Bugacov, A., Czajkowski, K., Kesselman, C., Kumar, A., Schuler, R. E., & Tangmunarunkit, H. (2017, October). Experiences with DERIVA: An asset management platform for accelerating eScience. In 2017 IEEE 13th International Conference on e-Science (e-Science) (pp. 79-88). IEEE. doi:10.1109/eScience.2017.20.

3. BDBag:

• Madduri, R., Chard, K., D’Arcy, M., Jung, S. C., Rodriguez, A., Sulakhe, D., ... & Foster, I. (2019). Reproducible big data science: A case study in continuous FAIRness. PloS one, 14(4), e0213013. doi:10.1371/journal.pone.0213013.

4. trimgalore:

• trimgalore https://github.com/FelixKrueger/TrimGalore

5. hisat2: