references.md

References

1. python:

• Anaconda (Anaconda Software Distribution, https://anaconda.com)

2. DERIVA:

• Bugacov, A., Czajkowski, K., Kesselman, C., Kumar, A., Schuler, R. E. and Tangmunarunkit, H. 2017 Experiences with DERIVA: An Asset Management Platform for Accelerating eScience. IEEE 13th International Conference on e-Science (e-Science), Auckland, 2017, pp. 79-88, doi:10.1109/eScience.2017.20.

3. BDBag:

• D'Arcy, M., Chard, K., Foster, I., Kesselman, C., Madduri, R., Saint, N., & Wagner, R.. 2019. Big Data Bags: A Scalable Packaging Format for Science. Zenodo. doi:10.5281/zenodo.3338725.

4. RSeQC:

• Wang, L., Wang, S., Li, W. 2012 RSeQC: quality control of RNA-seq experiments. Bioinformatics. Aug 15;28(16):2184-5. doi:10.1093/bioinformatics/bts356.

5. trimgalore: