An error occurred while loading the file. Please try again.
-
Gervaise Henry authored0c3d1a1e
Code owners
Assign users and groups as approvers for specific file changes. Learn more.
bdbagFetch.sh 355 B
#!/bin/bash
if [ -z "${3}" ]
then
bdbag --resolve-fetch all --fetch-filter filename\$*fastq.gz ${1}
for i in $(find */ -name "*R*.fastq.gz")
do
path=${2}.$(echo ${i##*/} | grep -o "R[1,2].fastq.gz")
cp ${i} ./${path}
done
elif [ "${3}" == "TEST" ]
then
bdbag --resolve-fetch all --fetch-filter filename\$*.txt ${1}
fi